1887

Abstract

The purpose of this study was to evaluate the usefulness of a new diagnostic multiplexed bead-based bioassay (Quantamatrix Multiplexed Assay Platform; QMAP) system with shape-encoded silica microparticles for the rapid and accurate detection and identification of 23 mycobacterial species/groups, including complex (MTBC).

A total of 295 mycobacterial clinical isolates cultured from respiratory specimens were used for identification of MTBC and non-tuberculous mycobacteria (NTM) using the QMAP system and the results were confirmed with PCR-restriction fragment length polymorphism (RFLP) analysis of the gene, sequence analysis and PCR-reverse blot hybridization assay (REBA).

The genus-specific probe of the QMAP system was positive for all 46 reference strains and negative for 59 non- strains. Based on 295 liquid culture-positive samples, both the culture-based conventional identification method and the QMAP system identified each 212 and 81 isolates as MTB and NTM species. The concordance rates for the identification of NTM species between the QMAP system and molecular assays were 92.8 % (77/83), 97.6 % (81/83) and 100 % (83/83) for PCR-RFLP, the sequence analysis and PCR-REBA, respectively.

The QMAP system yielded rapid, highly sensitive and specific results for the identification of MTBC and NTM and accurately discriminated between NTM species within 3 h.

Loading

Article metrics loading...

/content/journal/jmm/10.1099/jmm.0.000495
2017-06-01
2024-04-18
Loading full text...

Full text loading...

/deliver/fulltext/jmm/66/6/777.html?itemId=/content/journal/jmm/10.1099/jmm.0.000495&mimeType=html&fmt=ahah

References

  1. Zaman K. Tuberculosis: a global health problem. J Health Popul Nutr 2010; 28:111–113 [View Article][PubMed]
    [Google Scholar]
  2. World Health Organization Global Tuberculosis Report 2015 Appia, Geneva, Switzerland: WHO Press; 2015 www.who.int/tb/publications/global _report/en/
    [Google Scholar]
  3. de Groote MA, Pace NR, Fulton K, Falkinham JO 3rd. Relationships between Mycobacterium isolates from patients with pulmonary mycobacterial infection and potting soils. Appl Environ Microbiol 2006; 72:7602–7606 [View Article][PubMed]
    [Google Scholar]
  4. Marras TK, Chedore P, Ying AM, Jamieson F. Isolation prevalence of pulmonary non-tuberculous mycobacteria in Ontario, 1997–2003. Thorax 2007; 62:661–666 [View Article][PubMed]
    [Google Scholar]
  5. Thanachartwet V, Desakorn V, Duangrithi D, Chunpongthong P, Phojanamongkolkij K et al. Comparison of clinical and laboratory findings between those with pulmonary tuberculosis and those with nontuberculous mycobacterial lung disease. Southeast Asian J Trop Med Public Health 2014; 45:85–94[PubMed]
    [Google Scholar]
  6. Lee SK, Lee EJ, Kim SK, Chang J, Jeong SH et al. Changing epidemiology of nontuberculous mycobacterial lung disease in South Korea. Scand J Infect Dis 2012; 44:733–738 [View Article][PubMed]
    [Google Scholar]
  7. Maurya AK, Nag VL, Kant S, Kushwaha RA, Kumar M et al. Evaluation of an immunochromatographic test for discrimination between Mycobacterium tuberculosis complex & non tuberculous mycobacteria in clinical isolates from extra-pulmonary tuberculosis. Indian J Med Res 2012; 135:901–906[PubMed]
    [Google Scholar]
  8. Bae E, Im JH, Kim SW, Yoon NS, Sung H et al. Evaluation of combination of BACTEC mycobacteria growth indicator tube 960 system and Ogawa media for mycobacterial culture [korean]. Korean J Lab Med 2008; 28:299–306 [View Article][PubMed]
    [Google Scholar]
  9. Pérez-Osorio AC, Boyle DS, Ingham ZK, Ostash A, Gautom RK et al. Rapid identification of mycobacteria and drug-resistant Mycobacterium tuberculosis by use of a single multiplex PCR and DNA sequencing. J Clin Microbiol 2012; 50:326–336 [View Article][PubMed]
    [Google Scholar]
  10. Bloemberg GV, Voit A, Ritter C, Deggim V, Böttger EC. Evaluation of Cobas TaqMan MTB for direct detection of the Mycobacterium tuberculosis complex in comparison with Cobas Amplicor MTB. J Clin Microbiol 2013; 51:2112–2117 [View Article][PubMed]
    [Google Scholar]
  11. Biçmen C, Coşkun M, Gündüz AT, Senol G, Cirak AK et al. Identification of atypical mycobacteria isolated from clinical specimens by line probe assay (LIPA) [English]. Mikrobiyol Bul 2007; 41:503–510[PubMed]
    [Google Scholar]
  12. Ichiyama S, Iinuma Y, Yamori S, Hasegawa Y, Shimokata K et al. Mycobacterium growth indicator tube testing in conjunction with the AccuProbe or the AMPLICOR-PCR assay for detecting and identifying mycobacteria from sputum samples. J Clin Microbiol 1997; 35:2022–2025[PubMed]
    [Google Scholar]
  13. Chen R, Gao XB, Liu ZH, Shen XB, Guo AZ et al. Combination of multiplex PCR with denaturing high-performance liquid chromatography for rapid detection of Mycobacterium genus and simultaneous identification of the Mycobacterium tuberculosis complex. Diagn Microbiol Infect Dis 2013; 77:53–57 [View Article][PubMed]
    [Google Scholar]
  14. Şamlı A, Ilki A. Comparison of MALDI-TOF MS, nucleic acid hybridization and the MPT64 immunochromatographic test for the identification of M. tuberculosis and non-tuberculosis Mycobacterium species. New Microbiol 2016; 39:259–263[PubMed]
    [Google Scholar]
  15. Saifi M, Jabbarzadeh E, Bahrmand AR, Karimi A, Pourazar S et al. HSP65-PRA identification of non-tuberculosis mycobacteria from 4892 samples suspicious for mycobacterial infections. Clin Microbiol Infect 2013; 19:723–728 [View Article][PubMed]
    [Google Scholar]
  16. Aravindhan V, Sulochana S, Narayanan S, Paramasivam CN, Narayanan PR. Identification & differentiation of Mycobacterium avium & M. intracellulare by PCR-RFLP assay using the groES gene. Indian J Med Res 2007; 126:575–579[PubMed]
    [Google Scholar]
  17. Lee H, Park HJ, Cho SN, Bai GH, Kim SJ. Species identification of mycobacteria by PCR-restriction fragment length polymorphism of the rpoB gene. J Clin Microbiol 2000; 38:2966–2971[PubMed]
    [Google Scholar]
  18. Kim LN, Kim M, Jung K, Bae HJ, Jang J et al. Shape-encoded silica microparticles for multiplexed bioassays. Chem Commun (Camb) 2015; 51:12130–12133 [View Article][PubMed]
    [Google Scholar]
  19. Yates MD, Pozniak A, Uttley AH, Clarke R, Grange JM. Isolation of environmental mycobacteria from clinical specimens in south-east England: 1973-1993. Int J Tuberc Lung Dis 1997; 1:75–80[PubMed]
    [Google Scholar]
  20. Thomson RM, Yew WW. When and how to treat pulmonary nontuberculous mycobacterial disease. Respirology 2009; 4:12–26 [CrossRef]
    [Google Scholar]
  21. Bryant JM, Grogono DM, Greaves D, Foweraker J, Roddick I et al. Whole-genome sequencing to identify transmission of Mycobacterium abscessus between patients with cystic fibrosis: a retrospective cohort study. Lancet 2013; 381:1551–1560 [View Article][PubMed]
    [Google Scholar]
  22. Marras TK, Mendelson D, Marchand-Austin A, May K, Jamieson FB. Pulmonary nontuberculous mycobacterial disease, Ontario, Canada, 1998–2010. Emerg Infect Dis 2013; 19:1889–1891 [View Article][PubMed]
    [Google Scholar]
  23. Koh WJ, Chang B, Jeong BH, Jeon K, Kim SY et al. Increasing recovery of nontuberculous mycobacteria from respiratory specimens over a 10-year period in a tertiary referral hospital in South Korea. Tuberc Respir Dis 2013; 75:199–204 [View Article]
    [Google Scholar]
  24. Chien JY, Chang TC, Chiu WY, Yu CJ, Hsueh PR. Performance assessment of the BluePoint MycoID Plus kit for identification of Mycobacterium tuberculosis, including rifampin- and isoniazid-resistant isolates, and nontuberculous mycobacteria. PLoS One 2015; 10:e0125016 [View Article][PubMed]
    [Google Scholar]
  25. Antonenka U, Hofmann-Thiel S, Turaev L, Esenalieva A, Abdulloeva M et al. Comparison of Xpert MTB/RIF with ProbeTec ET DTB and COBAS TaqMan MTB for direct detection of M. tuberculosis complex in respiratory specimens. BMC Infect Dis 2013; 13:280 [View Article][PubMed]
    [Google Scholar]
  26. Lee MR, Cheng A, Huang YT, Liu CY, Chung KP et al. Performance assessment of the DR. TBDR/NTM IVD kit for direct detection of Mycobacterium tuberculosis isolates, including rifampin-resistant isolates, and nontuberculous mycobacteria. J Clin Microbiol 2012; 50:3398–3401 [View Article][PubMed]
    [Google Scholar]
  27. De Boer AS, Kremer K, Borgdorff MW, de Haas PE, Heersma HF et al. Genetic heterogeneity in Mycobacterium tuberculosis isolates reflected in IS6110 restriction fragment length polymorphism patterns as low-intensity bands. J Clin Microbiol 2000; 38:4478–4484[PubMed]
    [Google Scholar]
  28. Ajbani K, Shetty A, Mehta A, Rodrigues C. Rapid diagnosis of extensively drug-resistant tuberculosis by use of a reverse line blot hybridization assay. J Clin Microbiol 2011; 49:2546–2551 [View Article][PubMed]
    [Google Scholar]
  29. De Zwaan R, van Ingen J, van Soolingen D. Utility of rpoB gene sequencing for identification of nontuberculous mycobacteria in the Netherlands. J Clin Microbiol 2014; 52:2544–2551 [View Article][PubMed]
    [Google Scholar]
  30. Richter E, Niemann S, Rüsch-Gerdes S, Hoffner S. Identification of Mycobacterium kansasii by using a DNA probe (AccuProbe) and molecular techniques. J Clin Microbiol 1999; 37:964–970[PubMed]
    [Google Scholar]
http://instance.metastore.ingenta.com/content/journal/jmm/10.1099/jmm.0.000495
Loading
/content/journal/jmm/10.1099/jmm.0.000495
Loading

Data & Media loading...

This is a required field
Please enter a valid email address
Approval was a Success
Invalid data
An Error Occurred
Approval was partially successful, following selected items could not be processed due to error