Genetic diversity of the dnaJ gene in the Mycobacterium avium complex

References

1. Aily D. C., Camargo S. S., Paro H. S., Passos C. A., Coelho A. G., Sato D. N., Shikama M. L., Silva R. R., Ueki S. Y. 1999; Systemic mycobacterioses in AIDS patients as determined by blood cultures on biphasic medium. Rev Argent Microbiol 31:53–57
   [Google Scholar]
2. Anz W., Lauthebach D., Meissner G., Willers I. 1970; Vergleich von sensitin-testen an meerschweinchen mit serotyp und huhnervirulenz bei M.avium – und M. intracellulare – stammen. Zentrabl Bakteriol Parasistenkd Infektionskr Hyg I Orig 215:536–549 (in German
   [Google Scholar]
3. Ashford D. A., Whitney E., Raghunathan P., Cosivi O. 2001; Epidemiology of selected mycobacteria that infect humans and other animals. Rev Sci Tech 20:325–337
   [Google Scholar]
4. Bardwell J. C., Tilly K., Craig E., King J., Zylicz M., Georgopoulos C. 1986; The nucleotide sequence of the Escherichia coli K12 dnaJ ⁺ gene.A gene that encodes a heat-shock protein. J Biol Chem 261:1782–1785
   [Google Scholar]
5. Boddinghaus B., Wolters J., Heikens W., Bottger E. C. 1990; Phylogenetic analysis and identification of different serovars of Mycobacterium intracellulare at the molecular level. FEMS Microbiol Lett 58:197–203
   [Google Scholar]
6. Comincini S., Barbarini D., Telecco S., Bono L., Marone P. 1998; Rapid identification of Mycobacterium tuberculosis and Mycobacterium avium by polymerase chain reaction and restriction enzyme analysis within sigma factor regions. New Microbiol 21:391–395
   [Google Scholar]
7. Frothingham R., Wilson K. H. 1993; Sequence-based differentiation of strains in the Mycobacterium avium complex. J Bacteriol 175:2818–2825
   [Google Scholar]
8. Jagadha V., Andavolu R. H., Huang C. T. 1985; Granulomatous inflammation in the acquired immune deficiency syndrome. Am J Clin Pathol 84:598–602
   [Google Scholar]
9. Kimura M. 1980; A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111–120 [CrossRef]
   [Google Scholar]
10. Lathigra R. B., Young D. B., Sweetser D., Young R. A. 1988; A gene from Mycobacterium tuberculosis which is homologous to the dnaJ heat-shock protein of E.coli . Nucleic Acids Res 16:1636 [CrossRef]
    [Google Scholar]
11. Liu H., Li Y., Huang X., Kawamura Y., Ezaki T. 2003; Use of the dnaJ gene for the detection and identification of all Legionella pneumophila serogroups and description of the primers used to detect 16S rDNA gene sequences of major members of the genus Legionella . Microbiol Immunol 47:859–869 [CrossRef]
    [Google Scholar]
12. Mijs W., de Haas P., Rossau R., van der Laan T., Rigouts L., Portaels F., van Soolingen D. 2002; Molecular evidence to support a proposal to reserve the designation Mycobacterium avium subsp .avium for bird-type isolates and ‘ M.avium subsp. hominissuis ’ for the human-/porcine-type of M. avium . Int J Syst Evol Microbiol 52:1505–1518 [CrossRef]
    [Google Scholar]
13. Morita Y., Kimura H., Minakami H., Saitoh M., Kato M., Nagai A., Kozawa K. 2002; Acid-fast bacteria in the gastric contents of a neonate. Pediatr Infect Dis J 21:987–988
    [Google Scholar]
14. Ohki M., Tamura F., Nishimura S., Uchida H. 1986; Nucleotide sequence of the Escherichia coli dnaJ gene and purification of the gene product. J Biol Chem 261:1778–1781
    [Google Scholar]
15. Pavlik I., Svastova P., Bartl J., Dvorska L., Rychlik I. 2000; Relationship between IS 901 in the Mycobacterium avium complex strains isolated from birds, animals, humans, and the environment and virulence for poultry. Clin Diagn Lab Immunol 7:212–217
    [Google Scholar]
16. Pozniak A. 2002; Mycobacterial diseases and HIV. J HIV Ther 7:13–16
    [Google Scholar]
17. Reddy V. M., O'Sullivan J. F., Gangadharam P. R. 1999; Antimycobacterial activities of riminophenazines. J Antimicrob Chemother 43:615–623 [CrossRef]
    [Google Scholar]
18. Saitou N., Nei M. 1987; The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425
    [Google Scholar]
19. Schaefer W. B. 1965; Serologic identification and classification of the atypical mycobacteria by their agglutination. Am Rev Respir Dis 92:Suppl.85–93
    [Google Scholar]
20. Schaefer W. B. 1968; Incidence of the serotypes of Mycobacterium avium and atypical mycobacteria in human and animal diseases. Am Rev Respir Dis 97:18–23
    [Google Scholar]
21. Sola C., Devallois A., Goh K. S., Legrand E., Rastogi N. 1996; Molecular characterization of Mycobacterium avium complex isolates from Caribbean patients by DT1/DT6-PCR, nonradioactive Southern hybridization, and the Accuprobe system. Curr Microbiol 33:352–358 [CrossRef]
    [Google Scholar]
22. Takewaki S., Okuzumi K., Ishiko H., Nakahara K., Ohkubo A., Nagai R. 1993; Genus-specific polymerase chain reaction for the mycobacterial dnaJ gene and species-specific oligonucleotide probes. J Clin Microbiol 31:446–450
    [Google Scholar]
23. Takewaki S., Okuzumi K., Manabe I., Tanimura M., Miyamura K., Nakahara K., Yazaki Y., Ohkubo A., Nagai R. 1994; Nucleotide sequence comparison of the mycobacterial dnaJ gene and PCR-restriction fragment length polymorphism analysis for identification of mycobacterial species. Int J Syst Bacteriol 44:159–166 [CrossRef]
    [Google Scholar]
24. Thierry D., Vincent V., Clement F., Guesdon J. L. 1993; Isolation of specific DNA fragments of Mycobacterium avium and their possible use in diagnosis. J Clin Microbiol 31:1048–1054
    [Google Scholar]
25. Thorel M. F., Krichevsky M., Levy-Frebault V. V. 1990; Numerical taxonomy of mycobactin-dependent mycobacteria, amended description of Mycobacterium avium , and description of Mycobacterium avium subsp. avium subsp. nov., Mycobacterium avium subsp. paratuberculosis subsp. nov., and Mycobacterium avium subsp. silvaticum subsp. nov. Int J Syst Bacteriol 40:254–260 [CrossRef]
    [Google Scholar]
26. Thorel M. F., Huchzermeyer H. F., Michel A. L. 2001; Mycobacterium avium and Mycobacterium intracellulare infection in mammals. Rev Sci Tech 20:204–218
    [Google Scholar]
27. Valente C., Demas S., Scarso S., Cuteri V., Job L., Marangon S., Dalla Valle L., Cancellotti F. M. 1997; The polymerase chain reaction for the identification of different species of Mycobacterium . Comp Immunol Microbiol Infect Dis 20:233–239 [CrossRef]
    [Google Scholar]
28. van der Giessen J. W., Eger A., Haagsma J., van der Zeijst B. A. 1993; Rapid detection and identification of Mycobacterium avium by amplification of 16S rRNA sequences. J Clin Microbiol 31:2509–2512
    [Google Scholar]
29. Wayne L. G., Kubica G. P. 1986; The Mycobacteriaceae . In Bergey's Manual of Systematic Bacteriology vol2 pp 1436–1457 Edited by Sneath P. H. A., Mair N. S., Sharpe M. E., Holt J. G. Baltimore: Williams & Wilkins;
    [Google Scholar]
30. Wayne L. G., Good R. C., Tsang A. & 13 other authors; 1993; Serovar determination and molecular taxonomic correlation in Mycobacterium avium , Mycobacterium intracellulare , and Mycobacterium scrofulaceum : a cooperative study of the International Working Group on Mycobacterial Taxonomy. Int J Syst Bacteriol 43:482–489 [CrossRef]
    [Google Scholar]